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VBRC Gene Detail
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[VBRC|VP0064602] HCV-1a-H77-NS5b location: (7602..9374) VOC[12055]: NS5b VOC function: Nonstructural protein NS5b GenBank gene acc: NP_751928 GenBank locus name: NS5B RNA-dependent RNA polymerase [VBRC|VP0064601] HCV-1a-H77-NS5a location: (6258..7601) VOC[12054]: NS5a VOC function: Nonstructural protein NS5a GenBank gene acc: NP_751927 GenBank locus name: NS5A protein [VBRC|VP0064600] HCV-1a-H77-NS4b location: (5475..6257) VOC[12053]: NS4b VOC function: Nonstructural protein NS4b GenBank gene acc: NP_751926 GenBank locus name: NS4B protein [VBRC|VP0064599] HCV-1a-H77-NS4a location: (5313..5474) VOC[12052]: NS4a VOC function: Nonstructural protein NS4a GenBank gene acc: NP_751925 GenBank locus name: NS4A protein [VBRC|VP0064598] HCV-1a-H77-NS3 location: (3420..5312) VOC[12135]: NS3 VOC function: Nonstructural protein NS3 (protease/helicase) GenBank gene acc: NP_803144 GenBank locus name: NS3 protease|helicase [VBRC|VP0064597] HCV-1a-H77-NS2 location: (2769..3419) VOC[12051]: NS2 VOC function: Nonstructural protein NS2 GenBank gene acc: NP_751923 GenBank locus name: NS2 protein [VBRC|VP0064596] HCV-1a-H77-p7 location: (2580..2768) VOC[12050]: p7 VOC function: p7 protein GenBank gene acc: NP_751922 GenBank locus name: p7 protein [VBRC|VP0064595] HCV-1a-H77-E2 location: (1491..2579) VOC[12049]: E2 VOC function: Envelope protein E2 GenBank gene acc: NP_751921 GenBank locus name: E2 protein [VBRC|VP0064594] HCV-1a-H77-E1 location: (915..1490) VOC[12048]: E1 VOC function: Envelope protein E1 GenBank gene acc: NP_751920 GenBank locus name: E1 protein [VBRC|VP0064603] HCV-1a-H77-F location: (342..828) VOC[12056]: F VOC function: Protein F GenBank gene acc: NP_803170 GenBank locus name: protein F [VBRC|VP0064593] HCV-1a-H77-C location: (342..914) VOC[12047]: C VOC function: Nucleocapsid protein GenBank gene acc: NP_751919 GenBank locus name: core protein [VBRC|VP0064592] HCV-1a-H77-PP location: (342..9377) VOC[12522]: PP VOC function: Polyprotein GenBank gene acc: NP_671491 GenBank locus name: polyprotein
GENE VBRC accession: VP0064592 name: HCV-1a-H77-PP
  (4 older abbreviations)
Protein Family (VOC) VOC ID: VBRC|VC12522 name: HCV-polyprotein
  abbr: PP function: Polyprotein
  alternate abbr: polyprotein
GenBank locus: polyprotein accession: NP_671491
Molecule type: polyprotein length: 9036 bp, 3011 aa
  molecular weight: 327,190 pI: 8.61
Annotation added: 4/26/2007 4:34:39 AM source: genbank
Annotations copied unmodified from GenBank record
Location (342..9377) in: Hepatitis C virus subtype 1a strain H77 (GenBank: NC_004102)
VBRC Taxonomy Flaviviridae>Hepacivirus>Hepatitis C virus>1>1a (linkout)
Protein Analysis   Blast Analysis   Sequence   Immune Epitopes   Curation   Notes  
Analysis Results VBRC Hits Evidence
Amino Acids Composition   IEA
Transmembrane Domains Number of domains: 15
(Select for Transmembrane Record) 		  IEA
Prosite Motifs 1. Prokaryotic membrane lipoprotein lipid attachment site profile
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 IEA
Coiled-coil Segments None IEA
Secretory Signal Peptides Got One!   IEA
InterPro Hits
No Hits
 
 IEA
Gene Ontology ID No Hits   IEA
PDB Hits
1.A mol:protein length:476 PROTEIN (NS3 PROTEIN)
2.A mol:protein length:21 ENVELOPE GLYCOPROTEIN E1
3.B mol:protein length:451 HCV HELICASE
4.A mol:protein length:31 Genome polyprotein
5.A mol:protein length:31 Genome polyprotein
6.A mol:protein length:31 Genome polyprotein
7.A mol:protein length:31 Genome polyprotein
8.A mol:protein length:31 Genome polyprotein
9.C mol:protein length:435 polyprotein
10.L mol:protein length:128 Protease NS2-3 (p23)
11. mol:protein length:435 RNA HELICASE
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 IEA
Protein-Protein Interaction No Hits   IEA
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